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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141960196_141961757_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141960196 - 141961757
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TTTCTTCTAAAG
Flanking Amino Acid:
PPTLGATVIIARETSSISGP
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
77.4
0.62
1
78.5
27.7
Minor 5ss
37.9
-1.4
3
50.4
45.8
Minor BPS
49.7
-0.1
1.8
62.47
39.2

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139