About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141962814_141966389_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141962814 - 141966389
Intron Length:
3576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTCTTTAAAC
Flanking Amino Acid:
LNGEDVTKEFESEMLDGFFG
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.9
0.43
1
64.5
40.5
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
76.3
0.8
1.3
80.56
33.5

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139