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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141967569_141968413_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141967569 - 141968413
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTACTAACA
Flanking Amino Acid:
GCHVAADGDPDSLLSAERQL
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.6
0.62
0.8
73.9
30
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
62.7
0.39
1.9
81.2
33.6

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139