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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14197077_14218523_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14197077 - 14218523
Intron Length:
21447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTTACTT
Flanking Amino Acid:
TKAAQSLNELELSETFAW*
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
73.2
37.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87.2
0.84
0.7
84.7
29.8
Minor 5ss
31.6
-2.1
2.9
39.6
39.8
Minor BPS
59.8
0.39
1.7
75.63
41.8

Associated Gene:

Gene:
COG5
Ensembl Gene ID:
ENSAPLG00000007291
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025877
14197051 - 14230123
33073