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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141974088_141977427_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141974088 - 141977427
Intron Length:
3340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTCA
5'SS Class:
major
3'SS Sequence:
TTCCTAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
SLKASKSTPEGIFKDRRKFL
Intron Amino Acid Position:
2269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
70.5
36.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.9
0.67
0.9
73.4
34.7
Minor 5ss
40.1
-1.1
2.7
42.5
44.2
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139