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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141977498_141977900_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141977498 - 141977900
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAAAT
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTGTCTCTATA
Flanking Amino Acid:
PLKPVTCQPFGASKERQEVR
Intron Amino Acid Position:
2292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
76.8
33.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
82.4
0.73
0.8
77.3
31.5
Minor 5ss
29.3
-2.4
2.9
32.2
42.1
Minor BPS
48.9
-0
1.9
66.56
40.1

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139