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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141979429_141980014_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141979429 - 141980014
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
TAATTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATCTAATT
Flanking Amino Acid:
KSPSFYSTEELYRYGVSKHC
Intron Amino Acid Position:
2496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
86.7
0.83
0.8
85
35
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
55.5
0.25
1.8
79.26
36.6

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139