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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141982411_141983039_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141982411 - 141983039
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
TTAACTTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CAACATTTAACT
Flanking Amino Acid:
LEAPDSLMLKISANSTRCAR
Intron Amino Acid Position:
2731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.3
0.57
1
73.4
41.6
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
57.4
0.31
1.5
68.7
41.6

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139