Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141983196_141985376_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141983196 - 141985376

Intron Length:

2181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

GTTTATTTAAAT

Flanking Amino Acid:

VVIQRAYPIQWMEKTSAGSY

Intron Amino Acid Position:

2783

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

77.4

33.4

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

83.1

0.74

0.9

80.3

37.3

Minor 5ss

44.5

-0.6

3.2

63.6

48.1

Minor BPS

67.5

0.63

1.6

83.3

37.1

Associated Gene:

Gene:

BRCA2

Ensembl Gene ID:

ENSAPLG00000007774

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008073

141955729 - 141991867

36139