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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141987767_141987940_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141987767 - 141987940
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGGTGTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTATCTTAATC
Flanking Amino Acid:
VDYRKQEKHKGVILSIWRPP
Intron Amino Acid Position:
2939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
62.3
0.28
1
55
44.7
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
72
0.67
1.2
74.32
36.8

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139