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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141988108_141988190_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141988108 - 141988190
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTTTTTTAAG
Flanking Amino Acid:
TKKTQYLQLSVSKKMLLQIF
Intron Amino Acid Position:
2995

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.1
0.72
1
87.2
30.4
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
51.7
-0
1.8
62.12
40.2

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139