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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141988327_141988982_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141988327 - 141988982
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATGGTTTGATT
Flanking Amino Acid:
VGVVISVSKTGFATMVYLSD
Intron Amino Acid Position:
3040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
37.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.7
0.74
0.8
81.2
30.9
Minor 5ss
40.8
-1
3.1
58.8
45.7
Minor BPS
51
0.11
1.9
70.92
41

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139