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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141989240_141989893_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141989240 - 141989893
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCTGTTTTATA
Flanking Amino Acid:
KFNELRSLVENVDSFCSDAE
Intron Amino Acid Position:
3126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.3
0.77
0.7
79.8
32.4
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
49.8
-0
2
66.19
40.9

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139