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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141994441_141996258_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141994441 - 141996258
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
ATTGCCTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTGCCTCTACA
Flanking Amino Acid:
PWKFNVHELTRRNIHDVPRQ
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.3
0.61
0.9
69.7
36.1
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
53.8
0.11
2
70.1
41.7

Associated Gene:

Gene:
N4BP2L1
Ensembl Gene ID:
ENSAPLG00000026439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036104
141994215 - 141997719
3505