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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142012457_142013344_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142012457 - 142013344
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGGCTGCAGT
Flanking Amino Acid:
SGLQNGNALADDIISLEDLN
Intron Amino Acid Position:
1262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
79.8
35.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
37.9
-1.4
3
47.1
42.6
Minor BPS
42.1
-0.5
2.5
68.08
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030183
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032678
142012255 - 142052202
39948