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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142013391_142014116_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142013391 - 142014116
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
CTATTATTACTT
Flanking Amino Acid:
IYLLWKTSVEEKQKTSGLQN
Intron Amino Acid Position:
1247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
84.8
32.8
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
78.5
0.64
0.9
77.3
36.7
Minor 5ss
38.3
-1.3
3.3
57.7
46.5
Minor BPS
49.7
0.06
1.9
69.07
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030183
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032678
142012255 - 142052202
39948