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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142014203_142016538_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142014203 - 142016538
Intron Length:
2336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATACTC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GAACACTCAACT
Flanking Amino Acid:
QLFGSPGLPLESLLPDDYVV
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.7
42.1
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
36.2
-1.6
3.2
43.7
43.5
Minor BPS
50.3
0.09
1.8
66.78
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030183
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032678
142012255 - 142052202
39948