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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142018338_142032050_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142018338 - 142032050
Intron Length:
13713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGGAGG
5'SS Class:
major
3'SS Sequence:
ATTCTTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATCCTGAAAT
Flanking Amino Acid:
TQRPPLQRRHRGIILKKNHG
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.4
45.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.8
0.47
0.9
66.3
34.2
Minor 5ss
24.8
-2.9
3.1
30.1
43.2
Minor BPS
67.9
0.64
1.5
81.19
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030183
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032678
142012255 - 142052202
39948