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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142032195_142036468_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142032195 - 142036468
Intron Length:
4274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTAAGT
Flanking Amino Acid:
WWKFDPEELEKRNKHGVTRE
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
36.9
-1.5
3.8
55.6
43.2
Minor BPS
65
0.55
1.8
83.17
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030183
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032678
142012255 - 142052202
39948