Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142036546_142036917_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142036546 - 142036917

Intron Length:

372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAT

U12 Branch Point Sequence:

CTCATATGAACA

Flanking Amino Acid:

AWEMKPYVEVALEKGYRVEF

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

80.5

34.9

Major BPS

87.1

0.92

0.7

85.9

22.5

Major PPT

78.6

0.64

0.9

73.2

37.2

Minor 5ss

44.9

-0.5

3.2

63.2

43.8

Minor BPS

47.5

-0.1

1.8

57.66

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030183

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032678

142012255 - 142052202

39948