About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142040665_142048289_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142040665 - 142048289
Intron Length:
7625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTGTTCAACA
Flanking Amino Acid:
LPGSGKSTLSRILLGESCDG
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.7
0.62
0.9
73.4
35.9
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
55.8
0.18
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030183
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032678
142012255 - 142052202
39948