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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142049708_142051950_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
142049708 - 142051950
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTCTC
5'SS Class:
major
3'SS Sequence:
ATTTCTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTCTTTCAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
68.3
42.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
73.6
0.53
1
74.8
33.2
Minor 5ss
33.7
-1.9
3.1
44.5
43.3
Minor BPS
60.7
0.33
1.8
74.83
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030183
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032678
142012255 - 142052202
39948