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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142090948_142096593_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142090948 - 142096593
Intron Length:
5646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTGATTAAAT
Flanking Amino Acid:
APYTSPDKLKDIFMFITRQL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
100
1.24
0.5
100
0
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
51.9
0.14
2.1
74.59
41.3

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595