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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142098202_142105178_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142098202 - 142105178
Intron Length:
6977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
VLVNLVPAHKNLNKQAYDLA
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595