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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142105260_142107327_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142105260 - 142107327
Intron Length:
2068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTGTTATTAATG
Flanking Amino Acid:
AQAIEPYITNFFNQVLMLGK
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.4
0.75
0.7
77.4
36.6
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
57.3
0.09
1.7
60.75
41.4

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595