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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142118064_142119796_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142118064 - 142119796
Intron Length:
1733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATGAT
5'SS Class:
major
3'SS Sequence:
TGTTTCTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGTTTCTAAATA
Flanking Amino Acid:
NKPLWQCYLGRFNDIHVPIR
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.4
32.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
70
0.45
1
67.2
38.3
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
66.3
0.51
1.6
75.34
36.5

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595