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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142123471_142125018_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142123471 - 142125018
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
AGTTCCTTAATG
Flanking Amino Acid:
HIYYQNSIDDRLLVERIFAQ
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.2
43.2
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
80.3
0.68
0.9
76.9
37.4
Minor 5ss
34
-1.8
2.9
42.1
44.4
Minor BPS
78.7
0.76
1.2
74.82
37.1

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595