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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142125133_142126659_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142125133 - 142126659
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
LYATLDSNAVKALNEMWKCQ
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
34.6
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
88.8
0.87
0.7
88.9
28.2
Minor 5ss
41.8
-0.9
3
53.3
38
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595