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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142132093_142133448_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142132093 - 142133448
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATCT
Flanking Amino Acid:
APVHIDTESISALIKQVNKS
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.6
85
22.6
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
63.3
0.5
1.6
77.33
39.7

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595