Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142135304_142135925_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142135304 - 142135925

Intron Length:

622

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTTGT

5'SS Class:

major

3'SS Sequence:

CCTTTTTTTCAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

AGGTGCTTATCT

Flanking Amino Acid:

KIEEDFPHIRSALLPVLHHK

Intron Amino Acid Position:

708

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

1.3

71.5

41.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

79.1

0.66

78.3

33.9

Minor 5ss

43.4

-0.7

2.9

58.9

40.2

Minor BPS

52.6

0.16

2.1

71.01

45.7

Associated Gene:

Gene:

PDS5B

Ensembl Gene ID:

ENSAPLG00000008377

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008878

142087763 - 142169357

81595