About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142138428_142143272_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142138428 - 142143272
Intron Length:
4845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGTGATTTGACT
Flanking Amino Acid:
EEVSPETLVKIQAIKMMVRW
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
70.2
0.5
1
72.1
33
Major PPT
74.9
0.56
0.9
70.7
39.9
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
59.1
0.37
1.6
76.66
40.1

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595