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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142143410_142149917_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142143410 - 142149917
Intron Length:
6508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTAACC
Flanking Amino Acid:
DGDLTEQGKISKPDMSRLRL
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.3
0.75
0.9
80.2
37.3
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
66.6
0.5
1.8
78.48
36

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595