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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142150042_142153222_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142150042 - 142153222
Intron Length:
3181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
QYQLCALAINDECYQVRQIF
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.9
33.2
Major BPS
70
0.5
1
67
39.8
Major PPT
79.6
0.67
0.9
77.6
35.5
Minor 5ss
34
-1.8
3.2
44.1
43.8
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595