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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142153428_142157764_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142153428 - 142157764
Intron Length:
4337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTCTTTTGATG
Flanking Amino Acid:
EYLKQHAAVSEKLLSLLPEY
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
51.8
-0
1.3
53.92
35

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595