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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142158406_142159674_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142158406 - 142159674
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
QGPDDAKMNEKLYTVCDVAM
Intron Amino Acid Position:
1064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
69.5
35.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
33.3
-1.9
3.5
42.7
39.1
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595