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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142159795_142160117_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142159795 - 142160117
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACCTT
5'SS Class:
major
3'SS Sequence:
CCCTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CCTTCTTTACAG
Flanking Amino Acid:
PARYFTQPDKNFSNTKNYLP
Intron Amino Acid Position:
1104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
67.7
43.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.5
0.78
0.7
78.7
27
Minor 5ss
49.2
-0
2.9
73.5
43.2
Minor BPS
50.4
-0.1
1.8
55.63
46

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595