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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142161744_142165386_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142161744 - 142165386
Intron Length:
3643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTGATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTTTTGATT
Flanking Amino Acid:
NPSSPGRIKGRLDSTEMDHS
Intron Amino Acid Position:
1173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.9
42.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82
0.72
0.8
74.7
40
Minor 5ss
32.4
-2
2.9
43.2
43.7
Minor BPS
71.4
0.75
1.1
82.67
32.4

Associated Gene:

Gene:
PDS5B
Ensembl Gene ID:
ENSAPLG00000008377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008878
142087763 - 142169357
81595