Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14218645_14223930_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14218645 - 14223930

Intron Length:

5286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

GATTTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TATCCTCTAATG

Flanking Amino Acid:

SRTAQLAKLQAACDLLRRII

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

29.3

Major BPS

82.2

0.8

0.9

81.6

Major PPT

80.4

0.68

0.9

36.3

Minor 5ss

41.9

-0.9

2.9

58.7

45.8

Minor BPS

55.5

0.03

1.7

62.86

39.1

Associated Gene:

Gene:

COG5

Ensembl Gene ID:

ENSAPLG00000007291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007578

14048812 - 14230123

181312

ENSAPLT00000028517

14200748 - 14230123

29376

ENSAPLT00000025877

14197051 - 14230123

33073

ENSAPLT00000007581

14056139 - 14230123

173985