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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142218052_142219062_F

Intron Information:

Intron Rank:
130894
Intron Class:
major
Intron Phase:
Intron Coordinates:
142218052 - 142219062
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTAGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAGAT
U12 Branch Point Sequence:
TTTGTCTTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
66.8
0.42
1.1
64.4
41.8
Major PPT
68.8
0.42
1.1
62.5
42.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
60.3
0.4
1.8
80.72
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039672
142217817 - 142223785
5969