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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142219167_142223518_F

Intron Information:

Intron Rank:
130895
Intron Class:
major
Intron Phase:
Intron Coordinates:
142219167 - 142223518
Intron Length:
4352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TACTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGATAATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.3
0.59
1
72.8
42
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
56.4
0.2
1.8
67.77
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039672
142217817 - 142223785
5969