Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14224001_14224099_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14224001 - 14224099

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGCCAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTATTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

CTCTTCTTATTT

Flanking Amino Acid:

RIGALQSTVDRIRAKIIDPY

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

70.6

41.3

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

86.1

0.81

0.7

85.4

28.1

Minor 5ss

45.6

-0.5

2.9

64.4

Minor BPS

61.9

0.45

1.6

74.56

43.3

Associated Gene:

Gene:

COG5

Ensembl Gene ID:

ENSAPLG00000007291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028517

14200748 - 14230123

29376

ENSAPLT00000025877

14197051 - 14230123

33073

ENSAPLT00000007581

14056139 - 14230123

173985

ENSAPLT00000007578

14048812 - 14230123

181312