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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14229403_14230038_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14229403 - 14230038
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CATGTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCATTAATT
Flanking Amino Acid:
KICAPMVRYSKLAFRTLVRK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
100
1.24
0.5
100
0
Major PPT
69.5
0.44
0.9
65.5
40.7
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
75.9
0.89
1.5
89.19
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007933
14229268 - 14253079
23812