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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142345535_142345913_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142345535 - 142345913
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCAATAACT
Flanking Amino Acid:
RLTHICRIDLKGHSPEWYNK
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.6
0.73
0.8
80.4
31.5
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
65.1
0.55
1.9
86.43
39.1

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010296
142345417 - 142475238
129822
ENSAPLT00000041475
142345381 - 142489786
144406
ENSAPLT00000038347
142345381 - 142465929
120549
ENSAPLT00000025588
142345417 - 142634863
289447