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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142346091_142350663_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142346091 - 142350663
Intron Length:
4573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATCCTGAATG
Flanking Amino Acid:
PHPVRDFVVLRTWRTDLPKG
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76
0.59
1
69.6
41.6
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
65.1
0.34
1.5
65.17
42.8

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025588
142345417 - 142634863
289447
ENSAPLT00000010296
142345417 - 142475238
129822
ENSAPLT00000041475
142345381 - 142489786
144406
ENSAPLT00000038347
142345381 - 142465929
120549