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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142358489_142363635_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142358489 - 142363635
Intron Length:
5147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
GGCACCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATACCCAAATC
Flanking Amino Acid:
RYLRSNCLDQVGLFRKSGVK
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.5
0.33
0.9
54.2
41.3
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
49.2
-0
2
65.22
40.2

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038347
142345381 - 142465929
120549
ENSAPLT00000025588
142345417 - 142634863
289447
ENSAPLT00000010296
142345417 - 142475238
129822
ENSAPLT00000041475
142345381 - 142489786
144406