About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142363796_142365897_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142363796 - 142365897
Intron Length:
2102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TATTAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATATTAATT
Flanking Amino Acid:
YSMSNKHGWTWSVPKFMKRM
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.72
0.9
78.3
39.6
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
61.3
0.43
1.6
77.29
39.4

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025588
142345417 - 142634863
289447
ENSAPLT00000010296
142345417 - 142475238
129822
ENSAPLT00000041475
142345381 - 142489786
144406
ENSAPLT00000038347
142345381 - 142465929
120549