About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142366072_142367172_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142366072 - 142367172
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTGCTAAAG
Flanking Amino Acid:
GVGASLTRPSRRLRWHSFQI
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.5
0.62
1
78.9
33.5
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
47.1
-0.3
2.4
64.91
42.8

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041475
142345381 - 142489786
144406
ENSAPLT00000038347
142345381 - 142465929
120549
ENSAPLT00000025588
142345417 - 142634863
289447
ENSAPLT00000010296
142345417 - 142475238
129822