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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142373830_142381659_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142373830 - 142381659
Intron Length:
7830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGCTTTACCC
Flanking Amino Acid:
LDKDLVEPLCRRLNTLNKCA
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.6
0.6
0.8
70.7
30
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
66.2
0.49
1.7
77.59
39

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041475
142345381 - 142489786
144406
ENSAPLT00000038347
142345381 - 142465929
120549
ENSAPLT00000025588
142345417 - 142634863
289447
ENSAPLT00000010296
142345417 - 142475238
129822