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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142383837_142465548_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142383837 - 142465548
Intron Length:
81712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TGTGAATTATTC
Flanking Amino Acid:
RHQLLTKIQQEIEAKEACDW
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
61.3
0.28
1
62
30.6
Major PPT
85.9
0.81
0.6
84.7
23
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
44.5
-0.4
2
57.26
41.4

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038347
142345381 - 142465929
120549