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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142383837_142475162_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142383837 - 142475162
Intron Length:
91326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TGTGAATTATTC
Flanking Amino Acid:
RGNQQRRRSLEIEAKEACDW
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
85.9
0.81
0.6
84.7
23
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
44.5
-0.4
2
57.26
41.4

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010296
142345417 - 142475238
129822